makeflow_viz(1)

NAME

makeflow_viz - visualization of Makeflow workflows

SYNOPSIS

makeflow_viz [options] <dagfile>

DESCRIPTION

makeflow_viz is a collection of tools to graphically display workflows. This includes DOT and PPM.

OPTIONS

Commands

  • -v,--version
    Show version string.
  • -h,--help
    Show help message.
  • -D,--display=<opt>
    Translate the makeflow to the desired visualization format: dot DOT file format for precise graph drawing. ppm PPM file format for rapid iconic display. cyto Cytoscape format for browsing and customization. dax DAX format for use by the Pegasus workflow manager. json JSON representation of the DAG.
  • --
    Options for dot output:
  • --dot-merge-similar
    Condense similar boxes
  • --dot-proportional
    Change the size of the boxes proportional to file size
  • --dot-no-labels
    Show only shapes with no text labels.
  • --dot-details
    Display a more detailed graph including an operating sandbox for each task.
  • --dot-task-id
    Set task label to ID number instead of command.
  • --dot-graph-attr
    Set graph attributes.
  • --dot-node-attr
    Set node attributes.
  • --dot-edge-attr
    Set edge attributes.
  • --dot-task-attr
    Set task attributes.
  • --dot-file-attr
    Set file attributes.
  • --
    The following options for ppm generation are mutually exclusive:
  • --ppm-highlight-row=<row>
    Highlight row <row> in completion grap
  • --ppm-highlight-row=<row>
    Highlight row <row> in completion grap
  • --ppm-highlight-file=<file>
    Highlight node that creates file <file> in completion graph
  • --ppm-highlight-file=<file>
    Highlight node that creates file <file> in completion graph
  • --ppm-highlight-executable=<exe>
    Highlight executable <exe> in completion grap
  • --ppm-highlight-executable=<exe>
    Highlight executable <exe> in completion grap
  • --ppm-show-levels
    Display different levels of depth in completion graph
  • --
    Options for JSON output:
  • --json
    Use JSON format for the workflow specification.
  • --jx
    Use JX format for the workflow specification.
  • --jx-args=<<file>>
    Evaluate the JX input with keys and values in file defined as variables.
  • --jx-args=<<file>>
    Evaluate the JX input with keys and values in file defined as variables.
  • --jx-define=<<var>=<expr>>
    Set the JX variable VAR to the JX expression EXPR.
  • --jx-define=<<var>=<expr>>
    Set the JX variable VAR to the JX expression EXPR.

EXAMPLES

To produce a DOT representation of the workflow

makeflow_viz -D dot Makeflow

To produce a cytoscape representation of the workflow

makeflow_viz -D cyto Makeflow

The Cooperative Computing Tools are Copyright (C) 2005-2021 The University of Notre Dame. This software is distributed under the GNU General Public License. See the file COPYING for details.

SEE ALSO

CCTools